| Maliwai Fit Island | Raja Ampat | 0.00 km² | — | — |
| Maningker Island | Raja Ampat | 0.00 km² | — | — |
| Mankawar Mansaup Nem Island | Tanimbar Islands | 0.00 km² | — | — |
| Miniwirkaryo Island | Teluk Wondama | 0.00 km² | — | — |
| Miot Ruwin Rituru Island | Raja Ampat | 0.00 km² | — | — |
| Miotobinaru Island | Raja Ampat | 0.00 km² | — | — |
| Motilalel Yefto Narapatle Island | Raja Ampat | 0.00 km² | — | — |
| Myot Atar Island | Raja Ampat | 0.00 km² | — | — |
| Namlol Kapatcol Kacuo Island | Raja Ampat | 0.00 km² | — | — |
| Namlol Yefpale Topalolono Island | Raja Ampat | 0.00 km² | — | — |
| Namlolo Nikapatcol Toleyasancopo Island | Raja Ampat | 0.00 km² | — | — |
| Ngalalel Nikapatcol Kacuokaleket Island | Raja Ampat | 0.00 km² | — | — |
| Ngalalel Nikapatcol Nafatabuo Island | Raja Ampat | 0.00 km² | — | — |
| Ngalalel Niyef Kacuo Topalyasancopo Island | Raja Ampat | 0.00 km² | — | — |
| Ngarwearlaran Kecil Island | Tanimbar Islands | 0.00 km² | — | — |
| Ngatun Dawan Island | Tanimbar Islands | 0.00 km² | — | — |
| Nu Kambi Island | Teluk Wondama | 0.00 km² | — | — |
| Nu Katu Island | Teluk Wondama | 0.00 km² | — | — |
| Nu Toroa Island | Yapen Islands | 0.00 km² | — | — |
| Nurprur Kecil Island | Yapen Islands | 0.00 km² | — | — |
| Nus Aite | Kaimana | 0.00 km² | — | — |
| Nus Aroiy Satu | Kaimana | 0.00 km² | — | — |
| Nus Didir | Kaimana | 0.00 km² | — | — |
| Nus Fiyongga | Kaimana | 0.00 km² | — | — |
| Nus Fondan | Kaimana | 0.00 km² | — | — |
| Nus Gogit | Kaimana | 0.00 km² | — | — |
| Nus Iwaasa | Kaimana | 0.00 km² | — | — |
| Nus Mangger | Kaimana | 0.00 km² | — | — |
| Nus Owur | Kaimana | 0.00 km² | — | — |
| Nus Suburanggat | Kaimana | 0.00 km² | — | — |
| Nus Tumuala Dua | Kaimana | 0.00 km² | — | — |
| Nus Tumuala Sat | Kaimana | 0.00 km² | — | — |
| Nusapokpok Island | Fakfak | 0.00 km² | — | — |
| Nusateni Tiga Island | Fakfak | 0.00 km² | — | — |
| O Nyarar Barat Island | Tanimbar Islands | 0.00 km² | — | — |
| Olobi Yef Tarapo Island | Raja Ampat | 0.00 km² | — | — |
| Omaniahu Island | Tanimbar Islands | 0.00 km² | — | — |
| Onutkoloiwai Island | Raja Ampat | 0.00 km² | — | — |
| Ounut Wai Pale Island | Raja Ampat | 0.00 km² | — | — |
| Pane Ujung Island | Jayapura | 0.00 km² | — | — |
| Robuki Selatan Island | Teluk Wondama | 0.00 km² | — | — |
| Ruvasi Island | Raja Ampat | 0.00 km² | — | — |
| Sagaf Yef Not Island | Raja Ampat | 0.00 km² | — | — |
| Sagof Atsa Island | Raja Ampat | 0.00 km² | — | — |
| Sagof Lim Island | Raja Ampat | 0.00 km² | — | — |
| Salabafono Kapatcol Ganan Island | Raja Ampat | 0.00 km² | — | — |
| Sarwandori Island | Yapen Islands | 0.00 km² | — | — |
| Sawaki Island | Teluk Wondama | 0.00 km² | — | — |
| Sawewua Island | Teluk Wondama | 0.00 km² | — | — |
| Sing Kepow Island | Jayapura | 0.00 km² | — | — |
| Sitpopoyef Matlolo Island | Raja Ampat | 0.00 km² | — | — |
| Sivivi Island | Eastern Seram | 0.00 km² | — | — |
| Siwanjawutu Besar Island | Kaimana | 0.00 km² | — | — |
| Somarwaintubun Utara Island | Tanimbar Islands | 0.00 km² | — | — |
| Songarommeta Island | Kaimana | 0.00 km² | — | — |
| Suawala Island | Kaimana | 0.00 km² | — | — |
| Tamoni Kecil Selatan Island | Teluk Wondama | 0.00 km² | — | — |
| Tamoni Kecil Utara Island | Teluk Wondama | 0.00 km² | — | — |
| Tanjong Island | Fakfak | 0.00 km² | — | — |
| Tapor Kapar Island | Raja Ampat | 0.00 km² | — | — |
| Tapor Tabitatu | Raja Ampat | 0.00 km² | — | — |
| Tarakuning Kecil Island | Fakfak | 0.00 km² | — | — |
| Taruk Induwaf Island | Raja Ampat | 0.00 km² | — | — |
| Tefartefar Island | Fakfak | 0.00 km² | — | — |
| Tekopi Island | Yapen Islands | 0.00 km² | — | — |
| Tenef Island | Raja Ampat | 0.00 km² | — | — |
| Tiplo Island | Raja Ampat | 0.00 km² | — | — |
| Tomyar Da Island | Tanimbar Islands | 0.00 km² | — | — |
| Tugarpuannerawain Tengah Island | Fakfak | 0.00 km² | — | — |
| Uf Island | Tual | 0.00 km² | — | — |
| Ufulenket Yefto Masosya Island | Raja Ampat | 0.00 km² | — | — |
| Vathabo Island | Southeast Maluku | 0.00 km² | — | — |
| Vatukannyasin Island | Tual | 0.00 km² | — | — |
| Wadjijof Utara Island | Fakfak | 0.00 km² | — | — |
| Wagmap Nikapatcol Towasarao Island | Raja Ampat | 0.00 km² | — | — |
| Wakatalis Yefto Masos Island | Raja Ampat | 0.00 km² | — | — |
| Wasancankaino Nikapatcol Lu Tolefia Island | Raja Ampat | 0.00 km² | — | — |
| Wasancankaino Niyef Katem Tolol Island | Raja Ampat | 0.00 km² | — | — |
| Wataduria Kecil Island | Fakfak | 0.00 km² | — | — |
| Watraat Satu Island | Tanimbar Islands | 0.00 km² | — | — |
| Watroal Island | Tanimbar Islands | 0.00 km² | — | — |
| Watu Aryatu Island | Tanimbar Islands | 0.00 km² | — | — |
| Watu Bosar Island | Tanimbar Islands | 0.00 km² | — | — |
| Watu Boyawan Island | Tanimbar Islands | 0.00 km² | — | — |
| Watu Bweya | Tanimbar Islands | 0.00 km² | — | — |
| Watu Ngirut Island | Tanimbar Islands | 0.00 km² | — | — |
| Wepi Kecil Island | Teluk Wondama | 0.00 km² | — | — |
| Wopiwore Island | Yapen Islands | 0.00 km² | — | — |
| Wowaran Kapatcol Tokacano Island | Raja Ampat | 0.00 km² | — | — |
| Wowaran Nikapatcol Lenatatololya Island | Raja Ampat | 0.00 km² | — | — |
| Wowaran Nikapatcol Tolennataya Island | Raja Ampat | 0.00 km² | — | — |
| Yamnini Kapatcol Tolol Island | Raja Ampat | 0.00 km² | — | — |
| Yapap Kapatcol Katem Island | Raja Ampat | 0.00 km² | — | — |
| Yef Bawang | Raja Ampat | 0.00 km² | — | — |
| Yef Bineh Nit | Kaimana | 0.00 km² | — | — |
| Yef Daf Tol | Raja Ampat | 0.00 km² | — | — |
| Yef Dufut | Raja Ampat | 0.00 km² | — | — |
| Yef Faerafuri | Kaimana | 0.00 km² | — | — |
| Yef Famli | Raja Ampat | 0.00 km² | — | — |
| Yef Insum Genani | Raja Ampat | 0.00 km² | — | — |